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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Ciclev10026458m |
| Common Name | CICLE_v10026374mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
LBD |
| Protein Properties |
Length: 218aa MW: 23940.2 Da PI: 8.4283 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10026458m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 50.5 | 5.9e-16 | 2 | 62 | 1 | 56 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56
+C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+
Ciclev10026458m 2 SCNGCRVLRKGCSESCILRPCLqwiesPESQGHATVFVAKFFGRAGLMSFISAVPESQRPG 62
6*********************************************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 218 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSESCILR PCLQWIESPE SQGHATVFVA KFFGRAGLMS FISAVPESQR 60
PGLLWTGNWH VCQAAVETVL RGGTLRPVPE LLNSCGGSPT PTSDDVSEAE VTCTDMSRLQ 120
DRSFPSSHCR FSSSRSKVSP AKRKRVEESA MKLQQSDLDL RLTPRFTGKV PPEVRRRPGT 180
PSMNSEESGT TTCFESGLTD HRYLNGAEER KLLNLFV*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HM596716 | 0.0 | HM596716.1 Citrus trifoliata clone Y2-H15 hypothetical protein mRNA, complete cds. |
