PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026374m
Common NameCICLE_v10026374mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 240aa    MW: 26244.8 Da    PI: 8.3604
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026374mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.42e-322103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q
  Ciclev10026374m   2 SCNGCRVLRKGCSESCILRPCLqwiesPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQ 95 
                      6********************************************************************************************* PP

           DUF260  90 lkaelall 97 
                      +++e++l+
  Ciclev10026374m  96 AAVETVLR 103
                      **998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.0621107IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESPE SQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPV PELLNSCGGS  120
PTPTSDDVSE AEVTCTDMSR LQDRSFPSSH CRFSSSRSKV SPAKRKRVEE SAMKLQQSDL  180
DLRLTPRFTG KVPPEVRRRP GTPSMNSEES GTTTCFESGL TDHRYLNGAE ERKLLNLFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.3000.0vegetative tissue
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5967160.0HM596716.1 Citrus trifoliata clone Y2-H15 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426065.11e-176LOB domain-containing protein 38
SwissprotQ9SN233e-96LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2H5PCU31e-175A0A2H5PCU3_CITUN; Uncharacterized protein
TrEMBLV4SKD91e-175V4SKD9_9ROSI; Uncharacterized protein
STRINGXP_006426065.11e-176(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-90LOB domain-containing protein 37