PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10026220m

Common Name

CICLE_v10026009mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 284aa MW: 31376.9 Da PI: 6.9281

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10026220m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00034	205	243	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Ciclev10026220m 205 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 243 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.179	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-7	203	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.67E-6	203	247	No hit	No description
SuperFamily	SSF47459	1.96E-10	203	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MMAGNPSWWS MHPLNPHQLS SSSSPSLFPS QYVHGSSSSF PFNSLPDSQD QHPQSWSQLL 60 LSGLPSDDDG FNSTPISHFH QPKKFESWED HHLQIINPYS SSRVDVVDDV KQEAPQANNL 120 YLHGPGEFQA TAASNWPQIM PLSPRSCVTS LSSNILDFSH TKPADKKNNQ QHPDHSSECN 180 STATRGVSKK ARVQTPSSQT PLKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR 240 FLQGQIEALS SPYLSTSPSA SMRNQHCVST HEMVFLFIFQ SEP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093872	6e-35	BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA.
GenBank	BT145010	6e-35	BT145010.1 Lotus japonicus clone JCVI-FLLj-18O21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006426930.1	0.0	transcription factor bHLH68
TrEMBL	V4SSS8	0.0	V4SSS8_9ROSI; Uncharacterized protein
STRING	XP_006426930.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10026220m
Entrez Gene	18037337