PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 294aa MW: 32281.5 Da PI: 8.1478

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10026197m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	8.7e-19	148	202	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Ciclev10026197m 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 788899***********************************************98 PP
2	HD-ZIP_I/II	125.5	2.4e-40	148	237	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Ciclev10026197m 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQELK-AL 237 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.459	144	204	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.63E-18	146	212	IPR009057	Homeodomain-like
SMART	SM00389	1.0E-15	146	208	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-17	148	202	IPR009057	Homeodomain-like
CDD	cd00086	1.14E-17	148	205	No hit	No description
Pfam	PF00046	3.3E-16	148	202	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	179	202	IPR017970	Homeobox, conserved site
Pfam	PF02183	4.2E-10	204	238	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.7E-25	204	247	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MGFDDGCNTG LVLGLGFASA IETTPTNKAN NINIVNHQQL QLPKGTCFEP SLSLGLPGEI 60 YPEAATATTK KNSNSIDVNK GYEESAAAGV AEYQILNRQA SPHSAVSNSF SSGRVVKRER 120 DLSSEEIEVE KVISSRASDE DEDGVNARKK LRLTKEQSAL LEESFKQHST LNPKQKQALA 180 RQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKKCCETL TDENRRLHKE LQELKALKLA 240 QPLYMHMPAA TLTMCPSCER IGGGIADGNS KGPFPMGTKP HCYSPFTNPS AAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	204	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.2739	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006426160.1	0.0	homeobox-leucine zipper protein HAT22
Swissprot	P46604	1e-101	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A067GGG6	0.0	A0A067GGG6_CITSI; Uncharacterized protein
TrEMBL	V4SKM0	0.0	V4SKM0_9ROSI; Uncharacterized protein
STRING	XP_006426160.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1671	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-89	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Ciclev10026197m
Entrez Gene	18036922

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]