PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026131m
Common NameCICLE_v10026131mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 311aa    MW: 34673.1 Da    PI: 7.3432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026131mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13105156155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h  +Er+RR+++++ ++ Lr+l+P++   + ++ + a+i+  A++Y+k+L+
  Ciclev10026131m 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPS---YVQRGDQASIVGGAINYVKELE 156
                      79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.22E-13103160No hitNo description
Gene3DG3DSA:4.10.280.104.7E-13103160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16104171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.002104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-10105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-9110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MALEAVVFQQ DPFSYGFKDL GETSDPWSCG FGLEEGAAHS ESLLQNGGLG LMTQKMAKTN  60
SSTCGGGGEC FFTGESRPRE APLACHQRKR RRTRSVKNIE EVESQRMTHI FVERNRRKQM  120
KNYLSVLRSL MPPSYVQRGD QASIVGGAIN YVKELEQLVQ TLEAHKRIHI LQQSDDHDHD  180
DAGFSTSIFS NFFSFPQYSD FRPNDSRESS STAPKKPSGP VADIEVTMAE SNANIKILST  240
RYPKQLFKMV TGFHSLGLHV LHLNVATFDN QVLYTFSVKV EEGCHLRSMN EVAAAVYDMM  300
GRVQGEAAFK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18791RKRRR
28792RKRRRT
3105116RMTHIFVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426315.10.0transcription factor bHLH94
TrEMBLV4SL100.0V4SL10_9ROSI; Uncharacterized protein
STRINGXP_006426315.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-65bHLH family protein