PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 317aa MW: 35167.2 Da PI: 8.831

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10026112m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++k +G g+W++ ++ g+ R++k+c++rw +yl Ciclev10026112m 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	58.6	1.4e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++ + +lG++ W++Ia++++ gRt++++k++w+++ Ciclev10026112m 67 RGNFTEEEDELIINFHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.683	9	61	IPR017930	Myb domain
SMART	SM00717	8.0E-14	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.62E-29	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	5.97E-12	16	61	No hit	No description
PROSITE profile	PS51294	28.687	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	8.4E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	7.01E-14	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLINYIK VHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIN FHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLYSRG 120 IDPQTHRPLN SAPVPAPSPG NNNNNNSNKR NNNTSTNTKT DCSNKFEMNV QSNRPVMQLV 180 PEFIMSTGRS IGTDKNHNYH SPSSAEDSSN NTSGSGVTTE EAHQELNLEL SIGLPQQPRI 240 INQKPAAGGS YQFFGANTNN NPSTGAAQTG AACLCYNLGF QNSKLACSCS SNPMPMSTII 300 TADNNLHRFY RPPLDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-29	14	116	7	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and weakly in roots and stems. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006426418.1	0.0	myb-related protein 308
Swissprot	P81393	4e-89	MYB08_ANTMA; Myb-related protein 308
Swissprot	P81395	4e-89	MYB30_ANTMA; Myb-related protein 330
TrEMBL	A0A067F6D4	0.0	A0A067F6D4_CITSI; Uncharacterized protein
TrEMBL	V4RXM7	0.0	V4RXM7_9ROSI; Uncharacterized protein
STRING	XP_006426418.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	3e-87	myb domain protein 7

Link Out ? help Back to Top
Phytozome	Ciclev10026112m
Entrez Gene	18037871

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]