PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026058m
Common NameCICLE_v10026058mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 330aa    MW: 36549.1 Da    PI: 7.3383
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026058mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.22.2e-32101612103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT..................... CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks..................... 74 
                      Fl+k+y++++d++++++isw+e+g +f+v+++ +fak++Lp+yFkh+nf+SFvRQLn+Yg k ++ +  + +s                     
  Ciclev10026058m  10 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGKKATTFTPVNCDSpvddtrtvqycvgvmeivvih 103
                      9***********************************************************887776666555588999**************** PP

                      ...........................X..TTSEEEEESXXXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  75 ...........................k..ekiweFkhksFkkgkkellekikrkkse 103
                                                 k   + weF++++F++g++e l++i+r+k++
  Ciclev10026058m 104 ksqftgldwlacsgytlcfshlpagfrKivADKWEFANENFRRGHREFLTEIRRRKTA 161
                      ***********99999999888877761569************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-446158IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-34776IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.12E-23774IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-171033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-2710158IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-174860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-176173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-34126158IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAQRSVPAPF LMKTYQLVDD PSTDDVISWN ESGATFIVWK TADFAKDLLP NYFKHNNFSS  60
FVRQLNTYGK KATTFTPVNC DSPVDDTRTV QYCVGVMEIV VIHKSQFTGL DWLACSGYTL  120
CFSHLPAGFR KIVADKWEFA NENFRRGHRE FLTEIRRRKT ATGQSAQTAG KTKATSPSNS  180
GEDMGSTSTS SPESKNQGSV ETAKFADLSD ENAKLRRDNE TLSSELAQAK KQCDELITFL  240
TEYVKVGPDQ INRIMGQGSC GSILDGLVGD TDDDEKKESS GGDLKLFGVW LKGERKKRAR  300
EETVVCGGSH EMKKVEFCAP YIKSSKVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-185692588Heat shock factor protein 1
5d5v_B8e-185692588Heat shock factor protein 1
5d5v_D8e-185692588Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.32770.0fruit
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425895.10.0heat shock factor protein HSF24 isoform X1
SwissprotP223352e-60HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLV4SJZ50.0V4SJZ5_9ROSI; Uncharacterized protein
STRINGXP_006425895.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.15e-49heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]