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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10026052m | ||||||||
Common Name | CICLE_v10026052mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 332aa MW: 36601.6 Da PI: 7.1463 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 145 | 194 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+W+AeIrd + + +r++lg+f+tae+Aa+a+++a+++++g Ciclev10026052m 145 RYRGVRHRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEDAARAYDEAALRFRG 194 7*****888.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.396 | 145 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.21E-33 | 145 | 204 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-23 | 145 | 203 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.9E-36 | 145 | 208 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-13 | 145 | 194 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 145 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 146 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 168 | 184 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MQYSGDDQRR MRWKEWEMSA MVSALKHVVA GDTDVVVSQA QQMQQNDYNM KVTAVTSSVG 60 NSSSSSSWAG SGQKRAREME GGDNFSSRPE REVDELSHVT AGSVFVVTAG TERLSISAST 120 RMQGEAIYEY NSNKKSVRVQ EPGRRYRGVR HRPWGKWAAE IRDPFKAARV WLGTFDTAED 180 AARAYDEAAL RFRGNKAKLN FPENVKLAKS SPNANSVAAQ LTISDSTTTL LPISTPSEPI 240 VHCQALDHYV PNTEVSSDFR DYSFLVSDFA EFQRQPMSSC LSSASSPLRL TSSHPFPGQP 300 PVQFMPAKTE SDSAEFSIPP WNASSYYPPS G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-24 | 143 | 205 | 3 | 66 | ATERF1 |
3gcc_A | 8e-24 | 143 | 205 | 3 | 66 | ATERF1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous with lower levels in seeds and siliques. {ECO:0000269|PubMed:16227468}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006427893.2 | 0.0 | ethylene-responsive transcription factor ABR1 isoform X1 | ||||
Refseq | XP_015382946.1 | 0.0 | ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
Swissprot | Q9FGF8 | 3e-38 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | V4S1F1 | 0.0 | V4S1F1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006427893.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9118 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 2e-27 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10026052m |
Entrez Gene | 18035784 |
Publications ? help Back to Top | |||
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