PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10025967m | ||||||||
Common Name | CICLE_v10025967mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 354aa MW: 39480.3 Da PI: 4.8483 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.6e-12 | 187 | 230 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Ciclev10025967m 187 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYLKEL 230 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.497 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-15 | 184 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-9 | 187 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-12 | 187 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.55E-5 | 188 | 234 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.9E-15 | 188 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MELTQHGFLE ELLAPPIARR DAWSSFSGGL NEYLPSGWIL DSLDESSTLA AAASNPSSFV 60 GFSAAPSEAS FECPPFTDHL HQGYHPFVDG FTVPEVDTSS YTKNEIPSFP SAQEEYPPMV 120 VEEDHDQLCL RSSDHLHQNH SFEETKSSCA EIEQATSNIT NQGFNMGLCV DRKRKNKKLE 180 GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYLKEL LERINKLQEE 240 ETELGANQLL IGKFTELKSN EASVRNSPKF DVERREIDTR IDICCSSKPG LLLSTVNTLE 300 VLGLEIQQCV ISCFNDFSLQ ASCSEAAERR TLLSSEEIKQ ALFSNAGYGG KCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 194 | KRKNKKLEGQPSKNLMAERRRRK |
2 | 189 | 196 | ERRRRKRL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426202.1 | 0.0 | transcription factor bHLH61 | ||||
Swissprot | Q9LSL1 | 6e-90 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | V4SFS6 | 0.0 | V4SFS6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006426202.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2043 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 5e-92 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10025967m |
Entrez Gene | 18037834 |
Publications ? help Back to Top | |||
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