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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10025961m | ||||||||
Common Name | CICLE_v10025961mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 355aa MW: 39303.8 Da PI: 6.6048 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.4 | 2.7e-21 | 159 | 209 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Ciclev10025961m 159 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDQAAYKLRGE 209 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.77E-34 | 158 | 218 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-23 | 159 | 217 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-38 | 159 | 222 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.182 | 159 | 216 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 159 | 217 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 160 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-15 | 160 | 209 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 182 | 198 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MAAAIDMYNS SRSISDPFRE ELMKALEPFM NIASSNCSSS SGFSSSSYSS YSPTTSSEAN 60 FFYPDGYNLC SPSYDTPMFS QGLMSFEQQP ISSLGLNHLT PSQILQIQAQ INFQQQQQQQ 120 VASLASRASI SSPKSNLLSP KAVPMKHVSN AQVAKPTKLY RGVRQRHWGK WVAEIRLPKN 180 RTRLWLGTFD TAEEAALAYD QAAYKLRGEF ARLNFPHLKH HGAHVTGEFG DYKPLHASVD 240 AKLQAICQNL ALNNNVQKQT SKQQQQQQQE AETKPVLLPA TAANIKVENT SATSLSSPTP 300 DHSLSDAGSS SPESDISFLD FNDTKWETEM DAFGLEKYPS VEIDWEAIRK LSEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 158 | 216 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428165.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
Refseq | XP_006464216.1 | 0.0 | ethylene-responsive transcription factor RAP2-4-like | ||||
TrEMBL | V4SR48 | 0.0 | V4SR48_9ROSI; Uncharacterized protein | ||||
STRING | XP_006464216.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006428165.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2680 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 8e-68 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10025961m |
Entrez Gene | 18036671 |