PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10025912m

Common Name

CICLE_v10025912mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 367aa MW: 39163.4 Da PI: 9.1537

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10025912m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7e-39	85	144	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ss Ciclev10025912m 85 NQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSSS 144 68899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-32	86	142	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-25	86	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	88	142	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	90	126	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MIQELLGAAG FISGDRKISI TGSIFEGTTS PLPPCTTTTT ATVTTTTATA APPPPPPPLP 60 TTTTSNTDSN IGNNTNNTSS NSGNNQNLRC PRCDSSNTKF CYYNNYNLTQ PRHFCKTCRR 120 YWTKGGALRN VPIGGGCRKN KSSSTVTAAS FGKSSSSSSA ANKMKTVAYE IGRGGFVHHP 180 HEYYSSTPIM WNNSPHNSQL LALLRTSQNP NINPTGPSTS TSSVRVKEEQ GVIGTHHVIK 240 GEPVGDTAAV LNSGTMVFNP LSQQLQVPSQ LGLWKNNQHQ IQAPQQNGFL VGHEVQNSGV 300 QELYQRFKSS TNNYYADHLA SPVVLSNAAS STTTILESAP VAGGELGYWN PVFSWSDLST 360 TNGSYP*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MIQELLGAAG FISGDRKISI TGSIFEGTTS PLPPCTTTTT ATVTTTTATA APPPPPPPLP  60
TTTTSNTDSN IGNNTNNTSS NSGNNQNLRC PRCDSSNTKF CYYNNYNLTQ PRHFCKTCRR  120
YWTKGGALRN VPIGGGCRKN KSSSTVTAAS FGKSSSSSSA ANKMKTVAYE IGRGGFVHHP  180
HEYYSSTPIM WNNSPHNSQL LALLRTSQNP NINPTGPSTS TSSVRVKEEQ GVIGTHHVIK  240
GEPVGDTAAV LNSGTMVFNP LSQQLQVPSQ LGLWKNNQHQ IQAPQQNGFL VGHEVQNSGV  300
QELYQRFKSS TNNYYADHLA SPVVLSNAAS STTTILESAP VAGGELGYWN PVFSWSDLST  360
TNGSYP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.21290	0.0	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144749	3e-46	EF144749.1 Populus trichocarpa clone WS01117_M16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006466656.1	0.0	dof zinc finger protein 1
Refseq	XP_024036497.1	0.0	dof zinc finger protein 1
TrEMBL	A0A067GV74	0.0	A0A067GV74_CITSI; Uncharacterized protein
TrEMBL	V4SPL7	0.0	V4SPL7_9ROSI; Uncharacterized protein
STRING	XP_006466656.1	0.0	(Citrus sinensis)
STRING	XP_006425821.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16000	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-33	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Ciclev10025912m
Entrez Gene	18036293