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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10025339m |
| Common Name | CICLE_v10025339mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
AP2 |
| Protein Properties |
Length: 533aa MW: 58446.3 Da PI: 6.6397 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10025339m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 33.6 | 9.9e-11 | 250 | 306 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k++g
Ciclev10025339m 250 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 306
57*******************4444.2344336655.7799999*************98 PP
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| 2 | AP2 | 50.4 | 5.4e-16 | 349 | 400 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g
Ciclev10025339m 349 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 400
57****************988532...5*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010080 | Biological Process | regulation of floral meristem growth |
| GO:0010492 | Biological Process | maintenance of shoot apical meristem identity |
| GO:0035265 | Biological Process | organ growth |
| GO:0048364 | Biological Process | root development |
| GO:0060772 | Biological Process | leaf phyllotactic patterning |
| GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 533 aa
Download sequence Send
to blast |
MAPASNWLSF SLSPMEMWRS SSSSDSQFLP YDASQSAASP HYFLDNFYAN AGWTNPKSQV 60
FFTEEENIQA KELEVAAAQT MAADSSILPS LTQTHPVPKL EDFFADSSSL VHSQTETQDS 120
SLTHIYDHHH HGSAYFNDHQ QDLKAIAGFQ AFSTNSGSEV DDSTSMTRTQ LPAAEFVGHS 180
IESTGNELGF SNSCPTTGCL SLGVNNNATN NANSNNNVNK NQGCNEKKAI VSADSDCTKK 240
VADTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGGYDKE DKAARAYDLA 300
ALKYWGPTAT TNFPVSGYTK ELEEMKHVTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ 360
GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG ANAVTNFEMN RYDVEAIGKS 420
SLPIGGAAKR LKLSLESEQK LALTQDQQPQ CSSSSNNINF AALQPVGPAS IPCGIPFDAA 480
TAAALYHQNL YHHFQTTNFN PADSPGSTSS MAPPVALMQQ PAEFFLWPHQ SY*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Publications
? help Back to Top |
- Krizek BA
Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
BMC Res Notes, 2015. 8: p. 556
[PMID:26459062] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
Plant Physiol., 2016. 170(1): p. 283-93
[PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
Plant Physiol., 2016. 171(3): p. 2069-84
[PMID:27208279] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
[PMID:29078398]
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