PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025169m
Common NameCICLE_v10025169mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 623aa    MW: 68640.1 Da    PI: 5.0027
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025169mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.62.1e-1062556222374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +++L++cA+ v+s +  +a + L rl+  +  +g+p++R+a yfteAL +rl++   +  k++++ e++    ++ + ++k++++++P+ kf++
  Ciclev10025169m 255 TKALIDCARLVES-EPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQ---RAEKSITTLEAN---CEDCILSFKTLNDACPYSKFAY 341
                      689********99.5667778899*****************************9...555555555555...999******************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ltaNqaIlea+e+++++Hi+Df+i qG+QW  LlqaLa+Rp g+p ++Ri g+ +p+ g   + +l +tg+rL++fA +l +++ef++ +   +
  Ciclev10025169m 342 LTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPvKVRISGIPAPALGksPAASLLATGDRLREFAGSLSLNLEFEP-ILIPI 434
                      *****************************************87777*********9999889999***********************.6889* PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       +l+ +++rv+p+Eal+Vn++lql +lld++    +   + L++ ksl+P+vv+++e ea++n++ Fl+rf +al+yy+a+f+sle ++ ++s+
  Ciclev10025169m 435 RKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVE---NALQMAKSLNPNVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSD 525
                      ****************************87766555...8****************************************************** PP

             GRAS 281 erikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvS 371
                      er  vEr++lg++i n++a e++  +rer e  e+Wr  +e++ F+ +p+s++a +qa+ ll +++ s  ++++++++ l+ l Wk+ pL++vS
  Ciclev10025169m 526 ERFQVERQILGPRIANLLAPEKQGaKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNySPLFTLNQSHDNLLtLSWKKVPLLTVS 619
                      *******************9998769****************************************999****987666555************ PP

             GRAS 372 aWr 374
                      +Wr
  Ciclev10025169m 620 SWR 622
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.748228600IPR005202Transcription factor GRAS
PfamPF035147.1E-104255622IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MAYMCADSGN LMAVAQQVIK QKQEQEKQQQ QQQQQQHQQN SDQPQQQFFG LNPYSLNPWT  60
SSSQHSISVS NSPNFGYGFT GPGFPDPLDT GESGFPFPQI DHHSTSGGFR FSDFGGGPGG  120
EFDSDEWMES LMNTAHSTDS SNLPPACDAW QNNASDFGLY ATDPFTSCPS QLGSPTSELN  180
RVVFADSQKT ILPAWPPSPP PPLVPPESAV KELAKQVSPS PSPSPSPSRV PPPNDAVGAS  240
TSTGFAEAEL AQPLTKALID CARLVESEPD KAVKSLVRLR GSVCAHGNPT ERVAYYFTEA  300
LYKRLTQRAE KSITTLEANC EDCILSFKTL NDACPYSKFA YLTANQAILE ATENASHIHI  360
VDFGIVQGIQ WSFLLQALAN RPTGKPVKVR ISGIPAPALG KSPAASLLAT GDRLREFAGS  420
LSLNLEFEPI LIPIRKLRAS SFRVDPNEAL VVNFMLQLNS LLDDNRLAVE NALQMAKSLN  480
PNVVTLAEYE ANLNRTGFLA RFKNALKYYT AVFESLEPNM TTDSDERFQV ERQILGPRIA  540
NLLAPEKQGA KRERVEDIEN WRIFMENSDF EGIPFSHYAL SQAEILLWNY NYSPLFTLNQ  600
SHDNLLTLSW KKVPLLTVSS WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1242536223375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425686.10.0SCARECROW-LIKE protein 7
RefseqXP_006466785.10.0SCARECROW-LIKE protein 7
RefseqXP_006466786.10.0SCARECROW-LIKE protein 7
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLV4SPA10.0V4SPA1_9ROSI; Uncharacterized protein
STRINGXP_006466785.10.0(Citrus sinensis)
STRINGXP_006425686.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein