PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024950m
Common NameCICLE_v10024950mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 765aa    MW: 84060.9 Da    PI: 6.452
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024950mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.7e-21110165156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Ciclev10024950m 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 165
                      7999************************************************9987 PP
2START222.31.6e-692835035206
                      HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
            START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                      + ++el k+a+a+ p+W +s     e++n+de++++f+ +++      +s+ea+r+ gvv+ +l++lv++++d++ qW+ +++    ka+t++v
  Ciclev10024950m 283 QGMEELKKMATAGGPLWIRSLetgrEILNYDEYVKEFSAENSsngksnRSIEASRDAGVVFVDLPKLVQSFMDVN-QWKAMFPclisKAATVDV 375
                      568999*******************************998889********************************.****************** PP

                      ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
            START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                      i+ g      ga+qlm+aelq+l+p+vp R+++fvRy++ql+a++w+ivdvS+d  +++  ++s+++++++pSg+++e+ksngh+kvtwveh +
  Ciclev10024950m 376 ICGGegpnrnGAVQLMFAELQMLTPMVPtREVYFVRYCKQLSAEQWAIVDVSIDKVEENI-DASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLE 468
                      **********************************************************98.9******************************** PP

                      --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      +++ ++h ++rs+v+sgla+ga++w+ tlq qce+
  Ciclev10024950m 469 CQKGTVHTMYRSIVNSGLAFGARHWMTTLQLQCER 503
                      *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-2490165IPR009057Homeodomain-like
SuperFamilySSF466892.97E-2197168IPR009057Homeodomain-like
PROSITE profilePS5007118.285107167IPR001356Homeobox domain
SMARTSM003894.0E-19109171IPR001356Homeobox domain
PfamPF000461.3E-18110165IPR001356Homeobox domain
CDDcd000865.51E-17114165No hitNo description
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PROSITE profilePS5084837.223270506IPR002913START domain
SuperFamilySSF559612.42E-30272503No hitNo description
CDDcd088754.31E-109274502No hitNo description
SMARTSM002343.4E-72279503IPR002913START domain
PfamPF018521.3E-54283503IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-4333498IPR023393START-like domain
SuperFamilySSF559612.09E-13533749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MGVVDMSNNP PTSRTKDFFA SPALSLSLAG IFRGAGASAA ANNEVEEGYE GSGGAGGGSK  60
REETTVEISS ENSGHTRSRS DADFDGGGDG DDDDGDGDGD GDSKNKKKKR KKYHRHTAEQ  120
IREMEALFKE SPHPDEKQRQ QLSKQLGLAP RQVKFWFQNR RTQIKTIQER HENSLLKSEI  180
EKLREENKAM REAINKACCP NCGMATTSRD TSMTTEEQQL RIENARLKAE VEKLRAAVGK  240
CPPGATSTSS CSAGNDQENR SSLDFYTGIF GIDKSRIMEL VNQGMEELKK MATAGGPLWI  300
RSLETGREIL NYDEYVKEFS AENSSNGKSN RSIEASRDAG VVFVDLPKLV QSFMDVNQWK  360
AMFPCLISKA ATVDVICGGE GPNRNGAVQL MFAELQMLTP MVPTREVYFV RYCKQLSAEQ  420
WAIVDVSIDK VEENIDASLA KCRKRPSGCI VEDKSNGHCK VTWVEHLECQ KGTVHTMYRS  480
IVNSGLAFGA RHWMTTLQLQ CERLVFFMAT NVPTKDSSGV ATLAGRKSIL KLAQRMTWSF  540
CRAIGASSYH VWNKVTSKTG EDIRVSSRKN LNDPGEPLGV ILCAVSSVWL PVSPNVLFDF  600
LRDEAHRNEW DIMSNGGPVQ TIANLAKGQD RGNAVNIQTM KSKENSMWLL QDSYTNAYES  660
MVVYAPVDIT GMQSVITGCD SSNIAILPSG FSILPDGLES RPLVITSRQE EKITEGGSLL  720
SIAFQILTNN SPAAKLTMES VDSVNTLISC TLRNIKTSLQ CEDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110KKKKRK
2105111KKKKRKK
3107111KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426950.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2H5PFL80.0A0A2H5PFL8_CITUN; Uncharacterized protein
TrEMBLV4SMV20.0V4SMV2_9ROSI; Uncharacterized protein
STRINGXP_006426950.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]