PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024892m
Common NameCICLE_v10024891mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92446.1 Da    PI: 6.5047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024892mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Ciclev10024892m 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                     5679*****************************************************97 PP
2START178.63.8e-561613692205
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++e+l+v+ ++  g+++l
  Ciclev10024892m 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCSGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVEVLNVLPTAngGTIEL 253
                      789*******************************************************.8888888888****************9999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++l+al++l+p Rdf+ +Ry+  l++g++v++++S+ + q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+
  Ciclev10024892m 254 LYMQLYALTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRP 347
                      ****************************************99999988899******************************************* PP

                      HHHHHHHHHHHHHHHHTXXXXX CS
            START 184 lvksglaegaktwvatlqrqce 205
                      l++s+++ ++kt++a+l+++++
  Ciclev10024892m 348 LYESSTVLAQKTTMAALRQLRQ 369
                      *****************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6131276IPR001356Homeobox domain
SMARTSM003891.2E-151480IPR001356Homeobox domain
SuperFamilySSF466893.64E-171680IPR009057Homeodomain-like
CDDcd000869.31E-171777No hitNo description
PfamPF000462.9E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181975IPR009057Homeodomain-like
CDDcd146861.14E-669108No hitNo description
PROSITE profilePS5084826.049151379IPR002913START domain
CDDcd088753.97E-78155369No hitNo description
Gene3DG3DSA:3.30.530.202.4E-24160367IPR023393START-like domain
SuperFamilySSF559617.0E-38160372No hitNo description
SMARTSM002343.8E-42160370IPR002913START domain
PfamPF018522.2E-53161369IPR002913START domain
SuperFamilySSF559614.07E-5397489No hitNo description
SuperFamilySSF559614.07E-5521596No hitNo description
PfamPF086707.2E-52695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MAMSCKDGKT GSLDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TQSTTLATKD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSVGIVAISH GCSGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAVEVL  240
NVLPTANGGT IELLYMQLYA LTTLAPARDF WLLRYTSVLE DGSLVVCERS LKNIQNGPTM  300
PPVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS VPEVLRPLYE SSTVLAQKTT  360
MAALRQLRQM AQEVTQSSVN GWGRRPAALR ALSQRLSRGF NEAVNGFTDE GWTVMGNDGM  420
DDVTVLVNSS PDKLMGLNLS FANGFPAVSN AVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDVYSA AAIKVGPCSL PGSRVGTFGS QVILPLAHTI EHEEFMEVIK LEGVGHSPED  540
AIMPRDMFLL QLCSGMDENA VGTCAELIFA PIDASFADDA PLLPSGFRII PLDSGKETSS  600
PNRTLDLASA LEIGPAGNRA TNNYSTNSTC MRSVMTIAFE FAFESHMQEH VATMARQYVR  660
SIISSVQRVA LALSPSNISS QAGLRTPLGT PEALTLARWI CHSYRCYLGV DLLKSSSEGS  720
ESILKNLWHH TDAVMCCSLK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGRKAL  780
FAEFPQIMQQ GFACLQGGIC LSSMGRPVSY ERAVAWKVLN EEETAHCICF MFINWSFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426893.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_006465680.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_015386901.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLV4RYP00.0V4RYP0_9ROSI; Uncharacterized protein
STRINGXP_006465679.10.0(Citrus sinensis)
STRINGXP_006426892.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]