PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024614m
Common NameCICLE_v10024614mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 442aa    MW: 48043.2 Da    PI: 9.1008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024614mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.2e-172473255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++ GVr+++ +grWvAeI+d +    +  r +lg+++ +e+Aa a+++a+ +l+g
  Ciclev10024614m 24 RFVGVRQRP-SGRWVAEIKDST----QgVRLWLGTYDRPEDAALAYDEAACALRG 73
                     789******.7*********32....24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.46E-302381No hitNo description
PfamPF008471.0E-112473IPR001471AP2/ERF domain
PROSITE profilePS5103219.6122481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-272481IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-192482IPR016177DNA-binding domain
SMARTSM003804.2E-362487IPR001471AP2/ERF domain
PRINTSPR003671.7E-82536IPR001471AP2/ERF domain
PRINTSPR003671.7E-86383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAASVDHSAC ETDNPLLRLR PKKRFVGVRQ RPSGRWVAEI KDSTQGVRLW LGTYDRPEDA  60
ALAYDEAACA LRGPRARLNF PRLLNQVPAD AVRKKRYQPI SGEAAFRSWL LEKSSWYGGG  120
HQVSICEKRS LVGDSSRKLQ LRELFSPADI NEPADAFRKK IKPFYAGSHS EFQSMRPYDG  180
QTVFTSWHFG ESSQHHRGTG KISICKKKCL DGESVLLKAK GLADVRKKVQ AICGGCPLEF  240
LCAPPATSFS IRQGEGSSQE HMIIQVDHDS ASSIKLASSS LNENASSSAS DHQSVRASAL  300
PEDRDIETRA ALSRAQSMSE KLPFDVNKLN KIILLLSTEE CLALLAILFS GGSSLSTNAR  360
ILMRGAGICS AVGFYSSLGS SVLKYIGKAE QTAPFLTAVG CVAAACGFTS VSCLFLPDKL  420
KLIFACVACV MNILVLPFLF I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162385467ATERF1
3gcc_A2e-162385467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024955032.10.0uncharacterized protein LOC112498340
TrEMBLV4T7D20.0V4T7D2_9ROSI; Uncharacterized protein
STRINGXP_006442918.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-14related to AP2 11