PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ERF

Protein Properties

Length: 294aa MW: 32865.9 Da PI: 7.8784

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10024602m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.2	2e-18	74	124	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g+ Ciclev10024602m 74 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALAIKGH 124 69**998.******843...6*********************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.866	74	131	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-21	74	132	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	8.2E-32	74	132	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-12	74	124	IPR001471	AP2/ERF domain
SMART	SM00380	4.0E-37	74	137	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.8E-10	75	86	IPR001471	AP2/ERF domain
CDD	cd00018	7.01E-32	75	133	No hit	No description
PRINTS	PR00367	4.8E-10	97	113	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MEVSLNTENE AQATTSSSHP CSARESTSSS SSSPTKTVKS FKRIIIQEEK TKTASDNDHH 60 ESKTRKVSDL KHPTYRGVRM RQWGKWVSEI REPRKKSRIW LGTFATPEMA ARAHDVAALA 120 IKGHSAYLNF PELAHELPRP ATSSPKDIQA AAAKAAAIVS LPKGQELTNP PSPASTVTSH 180 DTQESASSPL LNNDDDDAFF DLPDLLLDGR HQMDELWDSF SWQQLTEPVS EPVGFGFWKR 240 AFDVNVAVLN YERKSIGIIT NYHLVLNWNI ILIDVYVRDN KMARIKNEKR VTQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-17	71	131	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00292	DAP	Transfer from AT2G35700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024044746.1	1e-174	ethylene-responsive transcription factor ERF038 isoform X1
Swissprot	Q9ZQP3	6e-58	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	V4VL78	0.0	V4VL78_9ROSI; Uncharacterized protein
STRING	XP_006440269.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	3e-48	ERF family protein

Link Out ? help Back to Top
Phytozome	Ciclev10024602m
Entrez Gene	18045787

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]