PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024517m
Common NameCICLE_v10024517mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 113aa    MW: 12670.3 Da    PI: 9.2121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024517mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.5e-0836771455
                     HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     d+iN+ + +Lr llP + + +++ +  +e+++++++YI+sLq
  Ciclev10024517m 36 DEINNLIMKLRPLLPRLNQRRNGTVPASEVVKETCNYIRSLQ 77
                     79**************879**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.9092276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-83593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-73690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-53677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
ATHITTYKRV IKIQERERSA MSSRRTSSSA SKITEDEINN LIMKLRPLLP RLNQRRNGTV  60
PASEVVKETC NYIRSLQSEA DDLSERLSQL LGSTDSNGVD ITLIINLLQQ QD*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16527868}.
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021651758.15e-31transcription factor PRE3-like
SwissprotF4JCN94e-23PRE4_ARATH; Transcription factor PRE4
TrEMBLV4THM74e-74V4THM7_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006439622.17e-75(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.15e-16bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]