PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024201m
Common NameCICLE_v10024201mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 182aa    MW: 20803.1 Da    PI: 9.8119
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024201mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.46.9e-101464655
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     + +E++RRd+++s  ++L +l+P+  ++a++  ls  + L +A+ +Ik+L+
  Ciclev10024201m 14 KNIEKNRRDHMKSLCFKLFSLVPShHFRASKSMLSQEDRLDLACCHIKQLR 64
                     679*********************999999999****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.137863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-101278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00741469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-71463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-101480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKKRSDKSSK PERKNIEKNR RDHMKSLCFK LFSLVPSHHF RASKSMLSQE DRLDLACCHI  60
KQLRERIDKL KRMKEQAMKS IKPNSNNNIM DETNNICSNL PVVELRDLGY SIEVVLISGV  120
QRNFMLYEVI SILEEEGAQV VSASFSTIGD KIFHTVRAQA KISRLGVETS IACQRLHDLV  180
D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442006.11e-131transcription factor bHLH162 isoform X2
TrEMBLV4TZB11e-130V4TZB1_9ROSI; Uncharacterized protein
STRINGXP_006442006.11e-130(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-21bHLH family protein