PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 180aa MW: 19954.5 Da PI: 9.9209

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10024105m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.6	5.7e-13	69	116	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr +r ++NRe+ArrsR RKk+ ieeL+ v ++ N++L ++l +l Ciclev10024105m 69 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISL 116 99****************************************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-12	65	129	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.358	67	130	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.1E-11	67	122	No hit	No description
SuperFamily	SSF57959	2.18E-11	69	121	No hit	No description
Pfam	PF00170	5.0E-11	69	118	IPR004827	Basic-leucine zipper domain
CDD	cd14702	7.16E-15	70	121	No hit	No description
PROSITE pattern	PS00036	0	72	87	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MELASNCTVT QANPAQNPEW SSNFSGRFLS NSQFHVPVHI FSPNTSVSPR SGSALDEARE 60 TPASIINEKR LKRVISNRES ARRSRMRKKK LIEELQAQVN HVQTVNHQLS EKLISLLESN 120 HQIVQENSQL KEKVSSLQLV ISDLLAPLRG LEEVNGNMNR PRAEASKGSS VLAEDHALL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006485842.2	1e-116	basic leucine zipper 43
Swissprot	Q9FMC2	3e-22	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	V4VML5	1e-125	V4VML5_9ROSI; Uncharacterized protein
STRING	XP_006440834.1	1e-126	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6185	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	7e-37	basic leucine-zipper 70

Link Out ? help Back to Top
Phytozome	Ciclev10024105m
Entrez Gene	18049698

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]