PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023840m
Common NameCICLE_v10023840mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 230aa    MW: 25007.6 Da    PI: 5.0746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023840mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.9e-1568116255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r +    +Wv+e+r+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Ciclev10023840m  68 LYRGIRCRN--SKWVSEVREPRK---STRIWLGTYPTPEMAAAAYDVAALALKG 116
                      69***9655..6*****999843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-967116IPR001471AP2/ERF domain
CDDcd000181.58E-1567125No hitNo description
SuperFamilySSF541712.09E-1768125IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-2568125IPR001471AP2/ERF domain
PROSITE profilePS5103219.4468124IPR001471AP2/ERF domain
SMARTSM003809.4E-2668132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGDHDPQNPT NVPELDHYLQ LRGPHSLHNN TSTCQNYPSP ISENLAHPSS NTSTMAAAPS  60
SSTKKHPLYR GIRCRNSKWV SEVREPRKST RIWLGTYPTP EMAAAAYDVA ALALKGSDAV  120
LNFPNFVSTY PVPASSSSVD IRNAAAAAAA SCARRKAESV SDPDENQRME QSRSNDVIGE  180
FVDEDALLNM PNLLVDMAEG MMVSPPRLNS SPSDDSPENS DGERLWSYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12651251173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440530.21e-169LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF027
SwissprotQ9FJ902e-54ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLV4TQ111e-168V4TQ11_9ROSI; Uncharacterized protein
STRINGXP_006440530.11e-169(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-45ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]