PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023783m
Common NameCICLE_v10023783mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 74aa    MW: 8472.06 Da    PI: 10.5227
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023783mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.91.1e-11349145
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePw 45
                     lp+G+rF+Ptdeelv +yL +k+ ++ l+++ v  i+  d+y  +P+
  Ciclev10023783m  3 LPVGYRFKPTDEELVFHYLINKACNRALPAQAVkeITARDLYLKHPK 49
                     79***********************997775444488889**99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-11248IPR003441NAC domain
PROSITE profilePS5100511.71373IPR003441NAC domain
PfamPF023656.7E-7449IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MELPVGYRFK PTDEELVFHY LINKACNRAL PAQAVKEITA RDLYLKHPKC SGSTMRKKNM  60
AKKIPRKQKE TLP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042717.13e-31NAC transcription factor 25
TrEMBLV4TKL54e-47V4TKL5_9ROSI; Uncharacterized protein
STRINGXP_006440712.17e-48(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2188055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-10NAC domain containing protein 84