PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023656m
Common NameCICLE_v10023656mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 161aa    MW: 17609.2 Da    PI: 9.3753
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023656mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-192374256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f taeeAa+a+++a+ +++g+
  Ciclev10023656m 23 RYRGIRRRP-WGKFAAEIRDPTRNG--TRLWLGTFSTAEEAARAYDRAAFAFRGH 74
                     69*******.**********98887..*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-132374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-322382IPR001471AP2/ERF domain
CDDcd000181.12E-292382No hitNo description
PROSITE profilePS5103225.0672381IPR001471AP2/ERF domain
SMARTSM003807.3E-372388IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-232382IPR016177DNA-binding domain
PRINTSPR003672.1E-112435IPR001471AP2/ERF domain
PRINTSPR003672.1E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MKASQGGGKN NERQRSVSVS EVRYRGIRRR PWGKFAAEIR DPTRNGTRLW LGTFSTAEEA  60
ARAYDRAAFA FRGHSAILNF PNEGQYRSQS SSGSSSLPYL VSPSPTSFSD ATGGNGSAGR  120
GVLSSSSGKE AEVIEFEYFD NNLLEELLEA RDNQYWPGKE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-281583674Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443851.11e-113ethylene-responsive transcription factor ERF098
RefseqXP_006480088.11e-113ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLV4U4I21e-111V4U4I2_9ROSI; Uncharacterized protein
STRINGXP_006480088.11e-112(Citrus sinensis)
STRINGXP_006443851.11e-112(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]