PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023578m
Common NameCICLE_v10023578mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 328aa    MW: 37047.4 Da    PI: 7.5896
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023578mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.22.1e-5551311129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL++kv++ +++  +++ +vdi+k+ePwdLp k++ +ekewyfF  rd+ky+tg r+nrat++gyWk+tgkdke+++
  Ciclev10023578m   5 LPPGFRFHPTDEELITYYLTRKVSDVSFTS-KAVVDVDINKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFR 97 
                      79*************************999.88***************988999**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        g lvg+kktLvfykgrapkgek++Wvmheyrle
  Ciclev10023578m  98 -AGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131
                      .999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-643151IPR003441NAC domain
PROSITE profilePS5100560.3415151IPR003441NAC domain
PfamPF023651.2E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT YYLTRKVSDV SFTSKAVVDV DINKCEPWDL PGKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRAGV LVGMKKTLVF YKGRAPKGEK  120
SNWVMHEYRL ENKHPFRSSK EEWVVCRVFQ KSAAAVKKPQ HTPSSQPSDE SLCDTNSMVN  180
EFGDIELPNL NGIANLTSGF GNIPSTHSYS SDNSNVNNLN MTNNMNLNMN WAAASLPSLT  240
WPSSLLSPNL SMNSLLLKAL QYRNYQAREA TSNEHNSFLQ QQGGINSRFE SDLSSNFQAS  300
SSSKVILDSV VPQQTQQEQP FNLDSIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-56415719174NAC domain-containing protein 19
3swm_B2e-56415719174NAC domain-containing protein 19
3swm_C2e-56415719174NAC domain-containing protein 19
3swm_D2e-56415719174NAC domain-containing protein 19
3swp_A2e-56415719174NAC domain-containing protein 19
3swp_B2e-56415719174NAC domain-containing protein 19
3swp_C2e-56415719174NAC domain-containing protein 19
3swp_D2e-56415719174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440976.10.0NAC domain-containing protein 92
SwissprotQ9FLJ23e-84NC100_ARATH; NAC domain-containing protein 100
TrEMBLV4TWF00.0V4TWF0_9ROSI; Uncharacterized protein
STRINGXP_006440976.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-111NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]