PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023345m
Common NameCICLE_v10023345mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 164aa    MW: 18432.4 Da    PI: 4.6926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023345mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.8e-161462254
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                     +ykG+r++k +g+Wv+eIr+p   g +  r +lg++ t e Aa a++ a  +l+
  Ciclev10023345m 14 KYKGIRRRK-WGKWVSEIRVP---G-SqERLWLGSYATQEAAAMAHDVAFYCLR 62
                     8*****998.**********8...4.35**********99******99988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-251374IPR001471AP2/ERF domain
CDDcd000182.64E-241473No hitNo description
PROSITE profilePS5103221.5351473IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-161473IPR016177DNA-binding domain
SMARTSM003803.4E-251479IPR001471AP2/ERF domain
PfamPF008471.5E-91462IPR001471AP2/ERF domain
PRINTSPR003672.5E-81526IPR001471AP2/ERF domain
PRINTSPR003672.5E-83753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGSNIEENAA HQRKYKGIRR RKWGKWVSEI RVPGSQERLW LGSYATQEAA AMAHDVAFYC  60
LRRPRSLDGL NFPSMLPASV VHAELSPKSV QKAASDAGMG VDAQMVLNKD KTDENENENS  120
GATQVLDEKQ FWEYDYEFED CGTSEEGELN ISVEDYLKTQ VDH*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441635.11e-121ethylene-responsive transcription factor ERF020
SwissprotO805429e-45ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLA0A2H5Q4M31e-119A0A2H5Q4M3_CITUN; Uncharacterized protein
TrEMBLV4TT341e-119V4TT34_9ROSI; Uncharacterized protein
STRINGXP_006441635.11e-120(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.13e-46ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]