PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022856m
Common NameCICLE_v10022856mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 129aa    MW: 14087.4 Da    PI: 10.5439
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022856mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-182963135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C  C+tt TplWR gp g+++LCnaCG++yrk+++
  Ciclev10022856m 29 CIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK 63
                     889*****************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.2572377IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-142374IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-152481No hitNo description
Gene3DG3DSA:3.30.50.109.5E-172581IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.79E-132880No hitNo description
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
PfamPF003201.8E-162963IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MDVKTKRREA EEMMKSPPAG TFNEMNKSCI DCHTTRTPLW RGGPAGPRSL CNACGIRYRK  60
TKKLALLGRD KGRAQKRKRK YSSNNNNKGA TKLGISLKAG LMAVGSDMGE EEQAAILLMS  120
LSYGCLYA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444444.11e-90GATA transcription factor 16 isoform X3
TrEMBLV4VWJ83e-89V4VWJ8_9ROSI; Uncharacterized protein
STRINGXP_006444444.14e-90(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2289534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-30GATA transcription factor 16