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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10022564m | ||||||||
Common Name | CICLE_v10022564mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 171aa MW: 19702.1 Da PI: 8.843 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135.3 | 4e-42 | 6 | 132 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 G+rF+Pt++e+++++L++k++g+ ++ ++i++++i+ +ePw+Lp ++++ +++ewyfFs+ +kkya+++r r+tk g Wk tg d+++ ++ Ciclev10022564m 6 LGYRFRPTEDEIITYFLQNKIHGHASRV-RAINTLNICAFEPWELPeQAATPDDEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGDRQIWDN 98 59***********************999.89***************445555889**************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g+kk Lvf+kg+ +k++kt+Wv+hey+ Ciclev10022564m 99 cGKEVIGVKKNLVFHKGHGSKAKKTSWVIHEYHS 132 88889***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 43.795 | 4 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.05E-44 | 6 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-21 | 7 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDYNCLGYRF RPTEDEIITY FLQNKIHGHA SRVRAINTLN ICAFEPWELP EQAATPDDEE 60 WYFFSELQKK YANSDRVDRT TKVGSWKVTG GDRQIWDNCG KEVIGVKKNL VFHKGHGSKA 120 KKTSWVIHEY HSSKASIHQK PYYVLCRLRG KLDDKPENYS RGESSGHAGF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-26 | 7 | 148 | 20 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-26 | 7 | 148 | 20 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-26 | 7 | 148 | 20 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-26 | 7 | 148 | 20 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-26 | 7 | 148 | 23 | 165 | NAC domain-containing protein 19 |
3swm_B | 1e-26 | 7 | 148 | 23 | 165 | NAC domain-containing protein 19 |
3swm_C | 1e-26 | 7 | 148 | 23 | 165 | NAC domain-containing protein 19 |
3swm_D | 1e-26 | 7 | 148 | 23 | 165 | NAC domain-containing protein 19 |
3swp_A | 1e-26 | 7 | 148 | 23 | 165 | NAC domain-containing protein 19 |
3swp_B | 1e-26 | 7 | 148 | 23 | 165 | NAC domain-containing protein 19 |
3swp_C | 1e-26 | 7 | 148 | 23 | 165 | NAC domain-containing protein 19 |
3swp_D | 1e-26 | 7 | 148 | 23 | 165 | NAC domain-containing protein 19 |
4dul_A | 1e-26 | 7 | 148 | 20 | 162 | NAC domain-containing protein 19 |
4dul_B | 1e-26 | 7 | 148 | 20 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006491409.1 | 1e-127 | NAC domain-containing protein 96-like | ||||
TrEMBL | V4TC69 | 1e-126 | V4TC69_9ROSI; Uncharacterized protein | ||||
STRING | XP_006491409.1 | 1e-126 | (Citrus sinensis) | ||||
STRING | XP_006444688.1 | 1e-126 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18606 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 7e-40 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10022564m |
Entrez Gene | 18047064 |