PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022548m
Common NameCICLE_v10022548mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19119 Da    PI: 9.2759
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022548mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.26.5e-161660145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     k+ie +  r vtfskRr+g++KKA+E    ++ ++av++fs+ g+
  Ciclev10022548m 16 KKIEKQKARMVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGN 60
                     689***************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-21867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.208868IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-22983IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-131030IPR002100Transcription factor, MADS-box
PfamPF003194.6E-201762IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-133045IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-134566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MKMAPTGKGK LKIEIKKIEK QKARMVTFSK RRQGLFKKAQ EYANITGSQI AVLVFSPAGN  60
PYVHGSPSFD AVIDKFLSVN GGASSSSQVG AHHNEADVCR TPTPFHLVLQ NHHNEADVCR  120
GFLMALEDKI KRCRSAEDLS AVKAELEEVR VKVLERLKHI EEDEFVTSLL NC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442526.11e-126agamous-like MADS-box protein AGL29
TrEMBLV4U0V01e-124V4U0V0_9ROSI; Uncharacterized protein
STRINGXP_006442526.11e-125(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2014436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-17AGAMOUS-like 29