PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10022371m | ||||||||
Common Name | CICLE_v10022371mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21099.8 Da PI: 7.8363 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.8 | 2.2e-44 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC+++C++apyfp e+p+kf nvhk+FGasn++kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el Ciclev10022371m 11 PCAACKFLRRKCVPGCIFAPYFPPEEPQKFVNVHKIFGASNMTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKEL 104 7********************************************************************************************* PP DUF260 95 allke 99 +++++ Ciclev10022371m 105 DSANA 109 99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.673 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-43 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MASSSNSYNS PCAACKFLRR KCVPGCIFAP YFPPEEPQKF VNVHKIFGAS NMTKLLNDLL 60 PHQREDAVNS LAYEAEARVR DPVYGCVGAI SFLQRQVHRL QKELDSANAD LIRYACNEIP 120 PGSQLPAPAP LSVSSIHPVI PRQRPIRIGN EGEGFYQPPS AYTHPSYILP WNDNPSPSGD 180 INHGGGGGGG QGNM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-67 | 2 | 119 | 2 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-67 | 2 | 119 | 2 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00581 | DAP | Transfer from AT5G63090 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006439893.1 | 1e-142 | protein LATERAL ORGAN BOUNDARIES | ||||
Refseq | XP_024044702.1 | 1e-142 | protein LATERAL ORGAN BOUNDARIES | ||||
Refseq | XP_024044703.1 | 1e-142 | protein LATERAL ORGAN BOUNDARIES | ||||
Swissprot | Q9FML4 | 6e-74 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | V4SZ79 | 1e-141 | V4SZ79_9ROSI; Uncharacterized protein | ||||
STRING | XP_006439893.1 | 1e-142 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63090.4 | 1e-76 | LBD family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10022371m |
Entrez Gene | 18046016 |
Publications ? help Back to Top | |||
---|---|---|---|
|