PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10022336m | ||||||||
Common Name | CICLE_v10021501mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 200aa MW: 21973.6 Da PI: 7.0335 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.3 | 1.1e-17 | 130 | 182 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ Ciclev10022336m 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 182 788899**********************************************8 PP | |||||||
2 | HD-ZIP_I/II | 80.2 | 3.3e-26 | 130 | 183 | 1 | 54 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 +kk+rlskeq+ lLEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRAR Ciclev10022336m 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARL 183 69***************************************************5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 7.2E-38 | 1 | 101 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 108 | 182 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-17 | 117 | 182 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.228 | 126 | 182 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-14 | 128 | 190 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.25E-16 | 130 | 183 | No hit | No description |
Pfam | PF00046 | 4.3E-15 | 130 | 182 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MGEKDDGLGL SLSLGCAARN EPSLRLNHMP LSSSQSMQNH HKRSPWTELF HSSDRNSDTR 60 SFLRGIDVNQ APTVADCEEE NGVSSPNSTV SSISGKRSER EPIGDETEAE RASCSRGSDD 120 EDGGAGDASR KKLRLSKEQS LLLEETFKEH STLNPKQKLA LAKQLNLRPR QVEVWFQNRR 180 ARLVICGFLM GIVVIVLNG* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 128 | 134 | SRKKLRL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445396.1 | 1e-130 | homeobox-leucine zipper protein ATHB-4 | ||||
Refseq | XP_006464444.1 | 1e-130 | homeobox-leucine zipper protein ATHB-4 isoform X1 | ||||
Swissprot | P46602 | 1e-62 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | V4VYT9 | 1e-143 | V4VYT9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006464444.1 | 1e-129 | (Citrus sinensis) | ||||
STRING | XP_006445396.1 | 1e-129 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60390.1 | 8e-36 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10022336m |
Entrez Gene | 18049843 |
Publications ? help Back to Top | |||
---|---|---|---|
|