PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022253m
Common NameCICLE_v10022253mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 210aa    MW: 24198.4 Da    PI: 9.8881
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022253mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.6e-18116168456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++f++eq++ Le +Fe++  p  +++ ++A++lgL+ rqV +WFqN+Ra+ k
  Ciclev10022253m 116 KRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 168
                      568************************************************99 PP
2HD-ZIP_I/II105.83.3e-34115206293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      +krr+s+eqvk+LE +Fe+e + e++ K+++a eLglqprqva+WFqn+RAR ktkq+E++y++Lk+++++l+++ e +++e+++L  ++++
  Ciclev10022253m 115 NKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIEHEYTKLKAEFETLASSYELMRREHQSLLVQVQK 206
                      79************************************************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-16107172IPR009057Homeodomain-like
PROSITE profilePS5007116.163110170IPR001356Homeobox domain
SMARTSM003892.4E-14113174IPR001356Homeobox domain
PfamPF000463.9E-15116168IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-16116176IPR009057Homeodomain-like
CDDcd000861.21E-12116171No hitNo description
PROSITE patternPS000270145168IPR017970Homeobox, conserved site
PfamPF021833.1E-11170209IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MRDSPLSPFY HFEPEAVTEG DTVTIKSSRI SLFGLKQESR NICQTHKTSY TWTVVPGIRS  60
NPFQDDINVT RHASSSLMNS EIPERAAAAA VKFRGLNLDW TDMQQPIASF GTGNNKRRFS  120
DEQVKSLEFM FESEARPESR MKHRMADELG LQPRQVAIWF QNKRARSKTK QIEHEYTKLK  180
AEFETLASSY ELMRREHQSL LVQVQKLKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045495.12e-91homeobox-leucine zipper protein ATHB-12
TrEMBLV4TLC21e-155V4TLC2_9ROSI; Uncharacterized protein
STRINGXP_006439220.11e-156(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1805779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-35homeobox 7