PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022205m
Common NameCICLE_v10021846mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 215aa    MW: 24510.7 Da    PI: 7.0247
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022205mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR194.21.6e-2953141290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      fY+eYA+++GFs+r+ +s+ks+r+g+i++r++ C+keg++++++k+ + + r+r++ r gC+a++ vk+ek g+w+vtk+e+eHnH l 
  Ciclev10022205m  53 FYDEYARRAGFSTRIISSRKSERDGSIISRHLACNKEGFNANRRKSGRVQIRKRESIREGCRAMILVKREKPGRWVVTKFEKEHNHLLL 141
                      9*********************************************99999***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2653141IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDLEAPAEET PAEEKTVITE SPTGGESDVC EIDTRREPYE GMVFESEDAA KIFYDEYARR  60
AGFSTRIISS RKSERDGSII SRHLACNKEG FNANRRKSGR VQIRKRESIR EGCRAMILVK  120
REKPGRWVVT KFEKEHNHLL LSSGKDGPSP DEKDRKIREL SMELHRANQK LEACQEQLQI  180
VMSYIEEHAK CLSKTVEEAV KDIQKVESGK QKEP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443020.11e-157protein FAR1-RELATED SEQUENCE 5
RefseqXP_006478710.11e-157protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL81e-22FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A067DTX51e-155A0A067DTX5_CITSI; Uncharacterized protein
TrEMBLV4TX101e-155V4TX10_9ROSI; Uncharacterized protein
STRINGXP_006478710.11e-156(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-51FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]