PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 232aa MW: 26762.4 Da PI: 9.2848

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10022057m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++++G g+W++ ++ g+ R++k+c++rw +yl Ciclev10022057m 14 KGPWTPEEDQILISFIQRYGHGNWRALPKQAGLMRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.7	1.1e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+e ++++++ lG++ W+tIa++++ gRt++++k++w+++l Ciclev10022057m 67 RGNFSKDEEETILKLHRVLGNR-WSTIAARLP-GRTDNEIKNYWHSHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.767	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.42E-31	10	108	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.04E-11	16	61	No hit	No description
PROSITE profile	PS51294	26.728	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-26	65	117	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	2.82E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MVRTPCCEKM GLKKGPWTPE EDQILISFIQ RYGHGNWRAL PKQAGLMRCG KSCRLRWINY 60 LRPDIKRGNF SKDEEETILK LHRVLGNRWS TIAARLPGRT DNEIKNYWHS HLKKRLKQNL 120 ISPKQQCDIV QALLNSDHNG NTTIRKRVCN STHQGIQNHP QDTPNFLPKS CNENTDIASE 180 NLPGIEGKYE TRDFAAMEKM NYENCSNVVE FWYSILMNSG NSIEMQENSG R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-30	12	116	5	108	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	LKKRLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269\|PubMed:14675437, ECO:0000269\|PubMed:20807373, ECO:0000269\|PubMed:22246661}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold stress. {ECO:0000269\|PubMed:14675437, ECO:0000269\|PubMed:20807373, ECO:0000269\|Ref.2}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006442693.1	1e-175	transcription factor MYB4
Swissprot	Q7XBH4	1e-72	MYB4_ORYSJ; Transcription factor MYB4
TrEMBL	V4T6P0	1e-173	V4T6P0_9ROSI; Uncharacterized protein
STRING	XP_006442693.1	1e-174	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	1e-72	myb domain protein 15

Link Out ? help Back to Top
Phytozome	Ciclev10022057m
Entrez Gene	18048453

Publications ? help Back to Top
Park MR, et al. Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development. Plant Cell Environ., 2010. 33(12): p. 2209-30 [PMID:20807373] Soltész A, et al. The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants. J. Appl. Genet., 2012. 53(2): p. 133-43 [PMID:22246661]