PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ERF

Protein Properties

Length: 238aa MW: 26253.9 Da PI: 5.8811

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10021995m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	66.2	6.7e-21	109	159	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g++vAeIrdp++ng +r++lg++ t+e+Aa a+++a+ +++g Ciclev10021995m 109 RYRGVRRRP-WGKFVAEIRDPKKNG--TRIWLGTYNTPEDAALAYDRAAFNMRG 159 69*****.*******9998..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	8.66E-32	108	169	No hit	No description
SMART	SM00380	1.6E-39	109	173	IPR001471	AP2/ERF domain
Pfam	PF00847	3.4E-15	109	159	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.512	109	167	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.9E-23	109	168	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.2E-32	109	168	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.4E-13	110	121	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.4E-13	149	169	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MYKKNISPSE LALLESISQY LLDDDATSFQ IPISSPSETT INSNETLSFT ENSDVSNDME 60 TYRALHDAIN VGWISFDQID DETDGTSTST TKSTPDRTEV ARDTLVGARY RGVRRRPWGK 120 FVAEIRDPKK NGTRIWLGTY NTPEDAALAY DRAAFNMRGS KAKLNFPHLI GSNVEPVPLG 180 RVTKKRASPE PSSPSSSSSS SSSSSSFTVL SYDSPKPKRR NYGISFCTSD VNWENVQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	6e-30	107	172	3	68	ATERF1
3gcc_A	6e-30	107	172	3	68	ATERF1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269\|PubMed:11950980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:11950980}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269\|PubMed:11950980, ECO:0000269\|PubMed:12068110}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445418.1	1e-174	ethylene-responsive transcription factor 13
Refseq	XP_006464838.1	1e-174	ethylene-responsive transcription factor 13-like
Swissprot	Q8L9K1	7e-45	ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBL	V4TEA5	1e-172	V4TEA5_9ROSI; Uncharacterized protein
STRING	XP_006464838.1	1e-173	(Citrus sinensis)
STRING	XP_006445418.1	1e-173	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	2e-41	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Ciclev10021995m
Entrez Gene	18047944

Publications ? help Back to Top
Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum. Plant Physiol., 2007. 145(4): p. 1588-99 [PMID:17965181] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]