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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10021898m | ||||||||
Common Name | CICLE_v10021891mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 27845.2 Da PI: 10.473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.7 | 1e-11 | 122 | 163 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa+++++a+ Ciclev10021898m 122 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 163 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.873 | 97 | 176 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-6 | 121 | 164 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-4 | 121 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-8 | 122 | 166 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-6 | 124 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MVSLRRRKLL GLCSGKSSFV APLPRTSENG NAPENSTQNI RPISLRPSSL DNVSLQRGIA 60 VEKEGPASSN VSGASSPEQR SKKPKEQHVE NEQHFPSFSG LPIKRRKRHR RKQIQNQEPC 120 LMRGVYFKNM KWQAAIKVDK KQIHLGTVGS QEEAARLYDR AAFMCGREPN FELSEEEKQE 180 LRQFKWDEFL AFTRRSITHK KYKRRVGVGS NKRSESPLEE DGDWDSKQGV NGFSASEEAG 240 QDSSAS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443556.1 | 0.0 | ethylene-responsive transcription factor-like protein At4g13040 isoform X3 | ||||
Refseq | XP_006443557.1 | 0.0 | ethylene-responsive transcription factor-like protein At4g13040 isoform X3 | ||||
Refseq | XP_006443559.1 | 0.0 | ethylene-responsive transcription factor-like protein At4g13040 isoform X3 | ||||
Refseq | XP_006479234.1 | 0.0 | ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_006479235.1 | 0.0 | ethylene-responsive transcription factor-like protein At4g13040 isoform X3 | ||||
Refseq | XP_006479236.1 | 0.0 | ethylene-responsive transcription factor-like protein At4g13040 isoform X3 | ||||
Refseq | XP_006479237.1 | 0.0 | ethylene-responsive transcription factor-like protein At4g13040 isoform X3 | ||||
Refseq | XP_024044937.1 | 0.0 | ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_024954446.1 | 0.0 | ethylene-responsive transcription factor-like protein At4g13040 isoform X3 | ||||
TrEMBL | A0A067FF44 | 0.0 | A0A067FF44_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NJ06 | 0.0 | A0A2H5NJ06_CITUN; Uncharacterized protein | ||||
TrEMBL | V4T941 | 0.0 | V4T941_9ROSI; Uncharacterized protein | ||||
STRING | XP_006479234.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443556.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 8e-51 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10021898m |
Entrez Gene | 18049185 |