PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Ciclev10021886m

Common Name

CICLE_v10021886mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 248aa MW: 28584.9 Da PI: 6.32

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10021886m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.3	8e-26	74	165	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr...traetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y+++vGF++r++++++s ++++i+ r++vCskeg+r+ + ++ + +r +r+ tr gC+a+l++ ++ gkw+++ +++eHnHel+p Ciclev10021886m 74 EFYEMYGRRVGFTIRNNRTRRSLKDNSIIGREYVCSKEGFRTGKCTN--RGSRvllPRPATREGCNAMLRIAAKDGGKWVIYGFVKEHNHELNP 165 6***************************************99888..33333569********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-23	74	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGSTSGEQFD LGRNYRQWLA ETFDGHETGD DELSDHFNGS DNFIQPSDGM FPLTSEPTEP 60 YISMEFDSAE DAREFYEMYG RRVGFTIRNN RTRRSLKDNS IIGREYVCSK EGFRTGKCTN 120 RGSRVLLPRP ATREGCNAML RIAAKDGGKW VIYGFVKEHN HELNPSKIPP RRSHRIAFSE 180 DVKDLKIREL STELHHEKKK SAAYQEQLCM VLKFIEEHTQ RMSLKVQVVT NNMQELESEE 240 RESSYPD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443022.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_006478704.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_006478705.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_006478706.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_006478708.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_024045386.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_024045387.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	V4TS59	0.0	V4TS59_9ROSI; Uncharacterized protein
STRING	XP_006478704.1	0.0	(Citrus sinensis)
STRING	XP_006443022.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18086	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	7e-45	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10021886m
Entrez Gene	18046485