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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10021843m |
Common Name | CICLE_v10021843mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
LBD |
Protein Properties |
Length: 251aa MW: 27444.7 Da PI: 6.7863 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10021843m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 126 | 1.8e-39 | 40 | 141 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93
+C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ae
Ciclev10021843m 40 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAE 133
7***********************9989****************************************************************** PP
DUF260 94 lallkeel 101
l +++++l
Ciclev10021843m 134 LTMVQNQL 141
****9985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MAEQQPDPIS EPRRRGAGKR ATTAPSPEAE PMSAPAPAAP CGACKFLRRK CVSGCIFAPH 60 FGSDQGAARF AAVHKVFGAS NVSKLLLHIP VNRRQDAVVT ISYEAQARLS DPVYGCVSTI 120 LALQQQVASL QAELTMVQNQ LLNSRFAMAN ALQTSQQPQQ PQHVALLHQQ QQQPAYSNSS 180 SASTNFINMS NLTSNFDFAA ETVLSCHSME PLHELSRPAH DDEDDEEESQ IPIMFTNDHH 240 QILHNHRRTN *
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |