PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 268aa MW: 29988.4 Da PI: 5.6387

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10021699m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++++G g+W++ ++ g+ R++k+c++rw +yl Ciclev10021699m 14 KGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.8	1.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l Ciclev10021699m 67 RGNFTREEEDTIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-27	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.235	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.06E-31	10	108	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	6.7E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.18E-12	16	61	No hit	No description
PROSITE profile	PS51294	25.219	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-26	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.48E-10	69	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MVRAPCCEKM GLKKGPWTPE EDQILINYIQ LYGHGNWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TREEEDTIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKQKQ 120 QQEPVINNHS NANHVTARSE ICSGASTPDR QDSTTTSSDM SSVTSSAANN ACVKTEPSSS 180 ENNHDSLVEI DENFWTEVLS AENSGISIED SNDRFSAVGG ADPLSIVEFQ SSLDAFRPGS 240 TLCDNTDFWF NLFTKAGDFS EMLPEIL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-27	12	116	5	108	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	LKKRLKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269\|PubMed:24415840}.
Uniprot	TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269\|PubMed:24415840}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269\|PubMed:24415840}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:24415840}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443843.1	0.0	transcription factor MYB13
Refseq	XP_006479545.1	0.0	transcription factor MYB13
Swissprot	Q9SJX8	2e-82	MYB14_ARATH; Transcription factor MYB14
TrEMBL	V4T9U3	0.0	V4T9U3_9ROSI; Uncharacterized protein
STRING	XP_006479545.1	0.0	(Citrus sinensis)
STRING	XP_006443843.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	2e-76	myb domain protein 14

Link Out ? help Back to Top
Phytozome	Ciclev10021699m
Entrez Gene	18046774

Publications ? help Back to Top
Chen Y, et al. AtMYB14 Regulates Cold Tolerance in Arabidopsis. Plant Mol. Biol. Rep., 2013. 31: p. 87-97 [PMID:24415840]