PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10021649m

Common Name

CICLE_v10021521mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 272aa MW: 29828.5 Da PI: 8.4892

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10021649m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	45.8	1.3e-14	59	87	36	63
zf-Dof 36 C.rryWtkGGalrnvPvGggrrknkksss 63 C rryWt+GG+lrn+PvGgg+rknk+sss Ciclev10021649m 59 CpRRYWTEGGSLRNIPVGGGSRKNKRSSS 87 549**********************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-8	39	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.6E-9	59	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MRAHLLCLIP FFFFSFFPFN KEIVVKPIEE IVTNTCPKPA SAAALERKAR PQKEQALNCP 60 RRYWTEGGSL RNIPVGGGSR KNKRSSSSSK KLPDPATPPS HHPHQNPKIH DHGEDLNLSF 120 PAATTQGYRS FSELVQLPNI DNKSQIPISS STTTTTTTTS SQQLSALELL TGISSRGLNS 180 FMPMPVPDPN TVYAPGFPMQ DFKPTLNFSL DGLGSGYGSL HHQSVQENNG RLLFPFEDLK 240 QVSSTSDHME QNREHGDSSG YWTGMLGGGS W*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006476325.1	1e-162	dof zinc finger protein DOF4.6 isoform X3
Swissprot	Q8LAP8	5e-35	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	V4SX57	0.0	V4SX57_9ROSI; Uncharacterized protein
STRING	XP_006439269.1	1e-158	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	5e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	Ciclev10021649m
Entrez Gene	18050270

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]