PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021624m
Common NameCICLE_v10021624mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 275aa    MW: 31078.3 Da    PI: 4.9833
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021624mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.5e-3056114259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  Ciclev10021624m  56 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDASMLIITYTSSHNHP 114
                      699***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3150116IPR003657WRKY domain
SuperFamilySSF1182905.49E-2653116IPR003657WRKY domain
SMARTSM007741.0E-3555115IPR003657WRKY domain
PROSITE profilePS5081131.19256116IPR003657WRKY domain
PfamPF031063.2E-2557114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDDSLSPKLD TQSEVSEPQA ETHQASSKRR KVTEKTVVKV KIGENPGKLK NEGPPSDFWS  60
WRKYGQKPIK GSPYPRGYYR CSTSKGCSAK KQVERCRTDA SMLIITYTSS HNHPCPDLHT  120
INLTKQSKET PQNHQPTGTE FQDHHPTSAP TQEQQLPQEE EKQNEPPIIT TPTAEDSNED  180
HFHYLQSPIR CPQDIIISQE DPFTGNLEKP NETLNLLLDE EPVSYQNLMA FSTPKSEEND  240
FFDELGELPS TSSVFTSFMR SNDLFDERIP VVPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-21561161779Disease resistance protein RRS1
5w3x_D2e-21561161779Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444508.10.0probable WRKY transcription factor 65
TrEMBLV4TBR70.0V4TBR7_9ROSI; Uncharacterized protein
STRINGXP_006444508.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153711117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-34WRKY DNA-binding protein 35