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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10021611m | ||||||||
Common Name | CICLE_v10021611mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 276aa MW: 30386.6 Da PI: 4.7154 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.6e-19 | 35 | 85 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +grWvAeI+d k+ r++lg+f taeeAa+a+++a+ l+g Ciclev10021611m 35 SKFVGVRQRP-SGRWVAEIKDtT----KKIRVWLGTFETAEEAARAYDEAACLLRG 85 79********.7*********33....36**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.07E-20 | 35 | 95 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.9E-14 | 35 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.34E-32 | 35 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-28 | 36 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-37 | 36 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 36 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-8 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-8 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MEIQFQQQKQ LQKACINQVN RAGKFKGRNR TKSNSKFVGV RQRPSGRWVA EIKDTTKKIR 60 VWLGTFETAE EAARAYDEAA CLLRGSNTRT NFDTNVSFDS PLASRIRNLV NNKKGCQQQS 120 VEASATTTTT AYTPTSTATS NSSCTSCSGV ISGELSSSSS DIIQDAQLFD DAYKPDLSKC 180 IEDFELGSAQ IDHSWGSGNG VDQFSYTQEL LDLPENGALP ETTTDSEFAE FERMKVERQI 240 SASLYAINGV QEYMDTVHDA AEAFWDLPPL CSYAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-16 | 27 | 102 | 5 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root hairs and leaves (PubMed:17827349). Expressed in root epidermis and root hairs (PubMed:23077241). {ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs) (PubMed:17449807, PubMed:17827349). Binds to the GCC-box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation and maintenance, and nodule development. Necessary for NF-induced gene expression and spontaneous nodulation activated by CCAMK. Functions downstream of CCAMK to activate nodulation gene expression (PubMed:17449807). Involved in early stages of root nodule development. Functions redundantly with ERN2. Is essential with ERN2 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots from 1 to 21 day after inoculation with Sinorhizobium meliloti (PubMed:17449807). Induced by Nod factors in root hairs (PubMed:17827349). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443442.1 | 0.0 | ethylene-responsive transcription factor RAP2-11 | ||||
Refseq | XP_006479125.1 | 0.0 | ethylene-responsive transcription factor RAP2-11 | ||||
Swissprot | A2Q5W1 | 1e-105 | ERN1_MEDTR; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A067EIU6 | 0.0 | A0A067EIU6_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TTC4 | 0.0 | V4TTC4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006479125.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443442.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16007 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-27 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10021611m |
Entrez Gene | 18047330 |
Publications ? help Back to Top | |||
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