PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021479m
Common NameCICLE_v10021479mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 290aa    MW: 33048.3 Da    PI: 6.3984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021479mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.4e-192673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll ++v+ +G g+W+++a+  g++Rt+k+c++rw++yl
  Ciclev10021479m 26 KGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYL 73
                     79********************************************97 PP
2Myb_DNA-binding46.86.9e-1579122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++ +++++ ++G++ W++Ia++++ gRt++++k++w++
  Ciclev10021479m  79 RGNITLQEQLMILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 122
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.6592177IPR017930Myb domain
SuperFamilySSF466893.0E-3223120IPR009057Homeodomain-like
SMARTSM007173.1E-162575IPR001005SANT/Myb domain
PfamPF002493.3E-182673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-232780IPR009057Homeodomain-like
CDDcd001671.66E-112873No hitNo description
SMARTSM007172.2E-1378126IPR001005SANT/Myb domain
PROSITE profilePS5129417.00378128IPR017930Myb domain
PfamPF002499.1E-1479122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2281127IPR009057Homeodomain-like
CDDcd001672.26E-983122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDAHVGGFSS GNHRQQSEEA ILGVRKGPWT VEEDSLLMNY VAIHGEGRWN AVASSAGLNR  60
TGKSCRLRWL NYLRPDVRRG NITLQEQLMI LELHSRWGNR WSKIAQYLPG RTDNEIKNYW  120
RTRVQKHAKQ LKCDVNSKQF RDAMRFVWVP RLIERIQAQS DSNSSGQPTS STTTCTDNST  180
TTNHADLATS QVSDSRPDPS FRADISGAQV YPESDLNDSY NLHSDWNYSQ NGLDNACESW  240
GWSKPGSDTQ GFEQQIQNNN WLGCGDSLES LWNEENIWFL RQQLYDDKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2426120497MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-242612658157MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-242612658157MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-242612027120MYB TRANSFORMING PROTEIN
1mse_C2e-2426120497C-Myb DNA-Binding Domain
1msf_C2e-2426120497C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444559.10.0transcription factor MYB78
TrEMBLA0A2H5NXN70.0A0A2H5NXN7_CITUN; Uncharacterized protein
TrEMBLV4VWU30.0V4VWU3_9ROSI; Uncharacterized protein
STRINGXP_006444559.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.18e-81myb domain protein 112