PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 295aa MW: 31303.4 Da PI: 6.1718

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10021443m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.3	7.5e-10	142	186	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Ciclev10021443m 142 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 186 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-15	135	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.12	137	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-15	139	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-7	142	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-11	143	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MANNPNEASS TDDFLEQILG IPNFGSAESG LAASDGGLAA GSPMMLQLSS GDGSSHISAL 60 GGGVSSGYHG QVFPLGLSLE QGKGGFLKPE EASGSGKRFP EEHAIKNVFH GQPLPSPVPA 120 APHPPAMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT DRAAMLDEIV 180 DYVKFLRLQV KVLSMSRVGA PGAVAPLVTT DLPLSSVEDE SGEGVRNQPA WEKWSNDGTE 240 RQVAKLMEEN VGAAMQFLQS KALCIMPISL ATAIYHSQPP ESPNLVKPET NPPP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	151	RLRRER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443926.1	0.0	transcription factor UNE12
Refseq	XP_006479602.1	0.0	transcription factor UNE12
Swissprot	O22768	1e-128	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A067FQX2	0.0	A0A067FQX2_CITSI; Uncharacterized protein
TrEMBL	V4U4U8	0.0	V4U4U8_9ROSI; Uncharacterized protein
STRING	XP_006479602.1	0.0	(Citrus sinensis)
STRING	XP_006443926.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-104	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10021443m
Entrez Gene	18046348

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]