PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021399m
Common NameCICLE_v10021399mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 298aa    MW: 33692.6 Da    PI: 5.2888
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021399mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.65.1e-39101111101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      aCa+Ck++rr+C+++C lapyfp +qpk f+n+hklFG+sn++k++k+l ++e++ +am+s++y+A++r r Pv+G+ g+i +l+ q+ q+++e
  Ciclev10021399m  10 ACAVCKYQRRRCSAECLLAPYFPPDQPKMFQNAHKLFGVSNIVKIIKNLdSDEQKAEAMRSIIYQANIRDRFPVHGCWGIICQLRYQIWQAEEE 103
                      7************************************************566679*************************************** PP

           DUF260  94 lallkeel 101
                      l++++++l
  Ciclev10021399m 104 LHAVHAQL 111
                      ****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.7659111IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-3710108IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTLKGGTSQA CAVCKYQRRR CSAECLLAPY FPPDQPKMFQ NAHKLFGVSN IVKIIKNLDS  60
DEQKAEAMRS IIYQANIRDR FPVHGCWGII CQLRYQIWQA EEELHAVHAQ LEMYRQHYQQ  120
QVSTMTDDVP SQLELGIGMA PPNALSLFNH NPQQQQQPYN AAALPLSQQH SLPLSQQHSY  180
SNNSYNSPYM DVKDSSVSNS LWIQHPYAIN NNANSLAIQS QLIASQPLTI QQEVVQDYDE  240
MHPFFDTIDD RQSYIDSKEA YESSSEESLK DTTQSIEHVA ENELKSAAAC FSLTSVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-2761147114LOB family transfactor Ramosa2.1
5ly0_B6e-2761147114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476673.10.0LOB domain-containing protein 27-like isoform X1
SwissprotQ9STS61e-64LBD27_ARATH; LOB domain-containing protein 27
TrEMBLV4TMK40.0V4TMK4_9ROSI; Uncharacterized protein
STRINGXP_006439670.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63032746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.17e-54LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]