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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10021319m |
| Common Name | CICLE_v10021319mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
TALE |
| Protein Properties |
Length: 306aa MW: 34105.2 Da PI: 6.5108 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10021319m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 23.1 | 1.2e-07 | 252 | 285 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54
k +yp+++++++L +++gL+ +q+ +WF N+R +
Ciclev10021319m 252 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
469*****************************87 PP
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| 2 | ELK | 25.4 | 3.2e-09 | 206 | 227 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK +L++++++++ ++++E++
Ciclev10021319m 206 ELKIELKQGFKSRIEDVREEIL 227
9*******************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010089 | Biological Process | xylem development |
| GO:0010192 | Biological Process | mucilage biosynthetic process |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MQEPSLGVMG SSSSGGGGGG GDVSGHHDQT ATVQLIKAEI ASHPLYEQLL AAHVSCLRVA 60
TPIDQLPLID AQLAQSHHVL RSYGSLQQAN NNNNHSLSPH ERQELDNFLA QYLIVLCTFK 120
EQLQQHVRVH AVEAVMGCRE IENTLQALTG VSLGEGTGAT MSDDEDDLHM DFSLDQSASD 180
SHDLMGFGPL LPTETERSLM ERVRQELKIE LKQGFKSRIE DVREEILRKR RAGKLPGDTT 240
SVLKNWWQQH SKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHSN SQSVTSLKSK 300
RKSSI*
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| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT1G62990.1 | 1e-163 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
| Publications
? help Back to Top |
- Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
Plant Physiol., 2008. 147(3): p. 1004-16
[PMID:18467456] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources.
Plant Physiol., 2012. 159(3): p. 884-901
[PMID:22589469] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - He JB, et al.
KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
J Integr Plant Biol, 2018. 60(6): p. 514-528
[PMID:29393579]
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