PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021226m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 318aa    MW: 34943.9 Da    PI: 5.49
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021226mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.15.2e-15222277358
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                      ++kr+rr+ +NRe+ArrsR+RK+a + eLe+ + +L ae ++L k l   ++++++
  Ciclev10021226m 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 277
                      68******************************************999888888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-16220284IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.0E-11220274No hitNo description
PROSITE profilePS5021710.909222277IPR004827Basic-leucine zipper domain
PfamPF001707.5E-12223276IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.27E-10224273No hitNo description
PROSITE patternPS000360227242IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MNSVFSADDF SDSFLSSPSP PPASFHALPM NRSQSEWELE KFLQEVTVSP RAISSSSASD  60
NSVPAVIGPS VMSKSRAYEI GDDDVVEIKK SHRDQSLDPP VIPSSTAPVD SDQYRAYLKT  120
KLDLACAAVA LRTAPVKPED KSSLIENQTQ AAKPSELGSQ AMATGTHPKA DFRPLGSADL  180
PAVQARPAAQ VRQSTSGSSR EDSDDDELEG DTETIEGLDS VDDKRARRML SNRESARRSR  240
RRKQAHLNEL ETQAGQLRAE HSSLLKGLTD VNQKYDESAV NNRILKADIE TLRAKVTYYF  300
IRIIQLSIFY IMWLRSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236243RRSRRRKQ
2238243SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.50900.0leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443938.20.0light-inducible protein CPRF2 isoform X2
RefseqXP_006479610.10.0light-inducible protein CPRF2 isoform X2
SwissprotQ990907e-55CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A067FZC30.0A0A067FZC3_CITSI; Uncharacterized protein
STRINGXP_006479609.11e-172(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.14e-38basic leucine zipper 25
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]