PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021224m
Common NameCICLE_v10021224mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 318aa    MW: 34966.2 Da    PI: 7.5699
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021224mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031426123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     +kC+ C++sFs+   L  H++ H
  Ciclev10021224m  4 HKCKLCTRSFSNGRALGGHMKAH 26
                     79******************998 PP
2zf-C2H211.10.0012209231123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C++C+k F++ + L  H +++
  Ciclev10021224m 209 YRCEKCKKAFRSYHALGGHKKVC 231
                      9************9999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.22E-5331No hitNo description
PfamPF139121.2E-6428IPR007087Zinc finger, C2H2
SMARTSM003550.044426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.76E-7209270No hitNo description
PfamPF139126.4E-6209229IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64209241IPR007087Zinc finger, C2H2
SMARTSM0035531209229IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-11248270IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598248270IPR007087Zinc finger, C2H2
SMARTSM003550.2248270IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEKHKCKLCT RSFSNGRALG GHMKAHLAAH PLPPKTNQQQ QPSDSTESAS TSSSSSGEGV  60
EVKGKSPEVA EEKSLGYGLR NNPKKSFRFA DPEFSFAVDS GSVVVQDRES ETESRNPTRR  120
RSKRNRKLFT AHQDHHQKPM LKKPNFLESP AEPEPVSSVS DTSPEEDVAM CLMMLSRDVW  180
MRNNDEAQDH KIVEMVEESE EIKLTRGKYR CEKCKKAFRS YHALGGHKKV CETNINAGTK  240
VAADEKIFEC PFCYKVFGSG QALGGHKRSH LLANSSSTAA AAAVVATDPA VKFENNLIDL  300
NLPAPLEEDD FSVVSDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440308.10.0zinc finger protein ZAT1
TrEMBLV4T0880.0V4T088_9ROSI; Uncharacterized protein
STRINGXP_006440308.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-34C2H2-like zinc finger protein