PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021073m
Common NameCICLE_v10021073mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 333aa    MW: 36967.3 Da    PI: 6.6834
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021073mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19119169155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Ciclev10021073m 119 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 169
                      59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.28E-33119177No hitNo description
Gene3DG3DSA:3.30.730.105.3E-30120177IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21120177IPR016177DNA-binding domain
PROSITE profilePS5103223.657120177IPR001471AP2/ERF domain
SMARTSM003805.9E-37120183IPR001471AP2/ERF domain
PfamPF008472.0E-12120169IPR001471AP2/ERF domain
PRINTSPR003673.5E-10121132IPR001471AP2/ERF domain
PRINTSPR003673.5E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVNSRHSVIP PVKYTEHRKH TKLMTPFSTN GQEMKPRVVR ISVTDGDATD SSSDEDCEVY  60
KRPRVKKFLS EIMIASSSSS SEIDVVSKSR ISKCKKKKKS GKVGAPATLK PAAKQPAGKK  120
FRGVRQRPWG KWAAEIRDPL RRVRLWLGTY DTAEEAAMVY DNAAIQLRGP DALTNFATPP  180
PKFPSQIKQS LSSGYNSGEE SHNNINNLSS PVSVLRCPSP SNEEAESRTS KESPDIASDM  240
REMRDESSVS ETLSAFSEYS TFDNTLFPND IFDFKSSVPD LFGCTEGIFK DDWDGLFYDS  300
SMDFGFGLST WRADDHFQDI GDIFASDNLV AI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20118176362ATERF1
3gcc_A2e-20118176362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4666498e-44AM466649.2 Vitis vinifera contig VV78X085330.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439407.10.0ethylene-responsive transcription factor CRF2
TrEMBLV4TH440.0V4TH44_9ROSI; Uncharacterized protein
STRINGXP_006439407.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-64cytokinin response factor 2