PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021038m
Common NameCICLE_v10021038mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 337aa    MW: 37609.4 Da    PI: 4.9936
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021038mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.3e-29122181258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      +Dgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++e+tY+g+H++
  Ciclev10021038m 122 EDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPSTFEVTYRGTHTC 181
                      7***************************98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.953116179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-28117181IPR003657WRKY domain
SuperFamilySSF1182901.22E-25120181IPR003657WRKY domain
SMARTSM007741.6E-38121183IPR003657WRKY domain
PfamPF031066.4E-27122181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MENAWRMEQK TLISELTEGM ELAKQLRVNL GSAETSEVLL RRILSSYEKA LLILNWSGSM  60
GQAQASGVPP ESPISINGSP RSEDFDGALK DNQDSSKKRK TLPRRTDKVK VSFESGLEGP  120
FEDGYSWRKY GQKDILGAKY PRSYYRCTYR NTQNCWATKQ VQRSDEDPST FEVTYRGTHT  180
CFNGSQSVPQ PASPEKHEHK LNHHSDNHQK GSGINSEYLD NKEIASPFSF PTSSLGCMKS  240
NDYCFSSLML DENNFLGGFS SSFIPPAAAE SNFYYISQNQ MNFGDVHNLQ QSESELPELQ  300
SANNSVANSP ILNLDFSIDA AELDSNFPFD NAGFSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-20121181868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439376.10.0probable WRKY transcription factor 53
TrEMBLV4TRT30.0V4TRT3_9ROSI; Uncharacterized protein
STRINGXP_006439376.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-67WRKY family protein