PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10020867m | ||||||||
Common Name | CICLE_v10020867mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 353aa MW: 39467.7 Da PI: 10.2381 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99 | 3e-31 | 286 | 343 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+ Ciclev10020867m 286 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHP 343 99***********************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 8.4E-18 | 237 | 282 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-33 | 272 | 344 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.953 | 279 | 345 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-27 | 282 | 344 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-38 | 284 | 344 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-27 | 286 | 343 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEEVEEANKA AVESCHRVLS LLSQPQDQVQ YKNLMVETGE AVFRFKKVVS LLNNGSGHAR 60 VRKLRKLPNP VNQSIFLENP HHKTEIPSKN LQFLQSSFHD NPVQEMGSLA KSSLTLGNPS 120 LELISNGKQH LQLGQQTPST SAHYHFLQQQ QLQQRLLHQQ QQQQQHHMKL QAEKMFRKSN 180 SGVSLNFDSS SCTPTMSSNR SFISSLSMDG SVANLDGSAF HLIGAPRSSD QSSQQHKRKC 240 SGRGEDGSVK CGSSGRCHCS KKRKHRVKKS IKVPAISNKL ADIPPDDYSW RKYGQKPIKG 300 SPHPRGYYKC SSMRGCPARK HVERCLEEPT MLIVTYEGEH NHPRLPSQSA TT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-20 | 277 | 346 | 7 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00284 | DAP | Transfer from AT2G30590 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006479579.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Refseq | XP_024045169.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Refseq | XP_024045170.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Refseq | XP_024954695.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-130 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | V4VV69 | 0.0 | V4VV69_9ROSI; Uncharacterized protein | ||||
STRING | XP_006479579.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443899.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3567 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 6e-85 | WRKY DNA-binding protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10020867m |
Entrez Gene | 18045859 |